accessionVersion	accession	version	submissionId	isRevocation	submitter	groupName	groupId	submittedAtTimestamp	submittedDate	releasedAtTimestamp	releasedDate	versionStatus	versionComment	pipelineVersion	sampleCollectionDate	geoLocCountry	submittingLab	sixteenSSpecies	mlstSequenceType	mlstSchema	mlstAlleles	amrfinderplusHitCount	amrfinderplusGenes	amrfinderplusClasses	amrfinderplusElementTypes	sixteenSAlignmentLength	sixteenSAlignmentIdentity	contigCount	totalLength	largestContig	n50	n75	l50	l75	ambiguousBasesPer100Kbp	gcPercent	checkmCompleteness	checkmContamination	checkmHeterogeneity	workflowNotes	released_assembly_fasta	immense_quality_summary	immense_quality_qc	sixteen_s_blast	checkm_output	amrfinderplus_output
LOC_000006N.1	LOC_000006N	1	SAMEA2072930	false	testuser	cEvo	1	1781913926	2026-06-20	1781914211	2026-06-20	LATEST_VERSION	AllTheBacteria Incremental_release_2025-05; ENA run ERR349780; study PRJEB1800; ENA collection_date=2012; sampleCollectionDate uses ENA collection_date_start for prototype upload	1	2012-01-01	Nepal	Wellcome Sanger Institute;SC	Klebsiella pneumoniae strain DSM 30104 16S ribosomal RNA, partial sequence	661	klebsiella	gapA(4), infB(3), mdh(1), pgi(36), phoE(9), rpoB(10), tonB(14)	40	blaSHV-27;kdeA;emrD;fieF;fosA;oqxB25;oqxA;silE;silS;silR;silC;silF;silB;silA;silP;pcoA;pcoB;pcoC;pcoD;pcoR;pcoS;qnrB1;tet(A);arsR;arsD;arsA;arsB;arsC;sul2;aph(3'')-Ib;aph(6)-Id;blaTEM-1;blaCTX-M-15;dfrA14;tet(D);aac(3)-IIe;catB3;blaOXA-1;aac(6')-Ib-cr5;catA2	BETA-LACTAM;EFFLUX;FOSFOMYCIN;PHENICOL/QUINOLONE;NITROFURAN/PHENICOL/QUINOLONE/TETRACYCLINE;SILVER;COPPER/SILVER;COPPER;QUINOLONE;TETRACYCLINE;ARSENIC;SULFONAMIDE;AMINOGLYCOSIDE;TRIMETHOPRIM;PHENICOL;AMINOGLYCOSIDE/QUINOLONE	AMR;STRESS	1066	99.531	137	5409789	712593	180989	105899	9	18	0.0	57.16	97.93	0.0	0.0	IMMense Loculus workflow: QUAST, MLST, 16S, CheckM, and AMRFinderPlus modules	"[{""fileId"":""3e8ac9c1-0453-4d41-aeab-9755c74776d2"",""name"":""LOC_000006N_1.fasta"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000006N/1/released_assembly_fasta/LOC_000006N_1.fasta""}]"	"[{""fileId"":""f121cd83-186b-4657-892f-f3449c502950"",""name"":""bacteria-batch-0_quality.tsv"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000006N/1/immense_quality_summary/bacteria-batch-0_quality.tsv""}]"		"[{""fileId"":""39e1ba6e-bf0f-4b6d-80e0-312c9dd9334f"",""name"":""LOC_000006N_1_16S_blast.tab"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000006N/1/sixteen_s_blast/LOC_000006N_1_16S_blast.tab""}]"	"[{""fileId"":""a0852e93-b1ae-4c61-aa1e-41c1eddd47d9"",""name"":""LOC_000006N_1_checkm_output.tsv"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000006N/1/checkm_output/LOC_000006N_1_checkm_output.tsv""}]"	"[{""fileId"":""a87b090a-59e3-4417-b88c-1994a55f78ff"",""name"":""LOC_000006N_1_amrfinderplus.tsv"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000006N/1/amrfinderplus_output/LOC_000006N_1_amrfinderplus.tsv""}]"
