accessionVersion	accession	version	submissionId	isRevocation	submitter	groupName	groupId	submittedAtTimestamp	submittedDate	releasedAtTimestamp	releasedDate	versionStatus	versionComment	pipelineVersion	sampleCollectionDate	geoLocCountry	submittingLab	sixteenSSpecies	mlstSequenceType	mlstSchema	mlstAlleles	amrfinderplusHitCount	amrfinderplusGenes	amrfinderplusClasses	amrfinderplusElementTypes	sixteenSAlignmentLength	sixteenSAlignmentIdentity	contigCount	totalLength	largestContig	n50	n75	l50	l75	ambiguousBasesPer100Kbp	gcPercent	checkmCompleteness	checkmContamination	checkmHeterogeneity	workflowNotes	released_assembly_fasta	immense_quality_summary	immense_quality_qc	sixteen_s_blast	checkm_output	amrfinderplus_output
LOC_000008J.1	LOC_000008J	1	SAMEA118215217	false	testuser	Bacteria Prototype	1	1790851593	2026-10-01	1790855571	2026-10-01	LATEST_VERSION	AllTheBacteria Incremental_release_2025-05; ENA run ERR14903668; study PRJEB72521; ENA collection_date=2025-03-31T00:00:00; sampleCollectionDate uses ENA collection_date_start for prototype upload	1	2025-03-30	Slovakia	Comenius University Science Park;Laboratory of Genomics and Bioinformatics;Comenius University Science Park Public Health Authority of the Slovak Republic	Klebsiella pneumoniae strain DSM 30104 16S ribosomal RNA, partial sequence	383	klebsiella	gapA(2), infB(6), mdh(1), pgi(3), phoE(8), rpoB(1), tonB(18)	52	blaSHV-1;emrD;ybtQ;ybtP;fieF;fosA;kdeA;oqxA;oqxB5;terA;terB;terC;terD;terE;aph(6)-Id;aph(3'')-Ib;blaCTX-M-14;iutA;iucC;iucB;iucA;armA;msr(E);mph(E);qnrS1;aph(3')-VI;aph(3')-VIb;mph(A);mrx(A);blaNDM-5;ble;sul2;merC;merP;merT;merR;tet(A);sul1;qacEdelta1;dfrA5;peg-344;rmpC;rmpD;rmpA;aac(6')-Ib;aadA1;blaOXA;blaOXA-48;blaCTX-M-15;aph(3')-Ia;blaTEM-1;catA1	BETA-LACTAM;EFFLUX;FOSFOMYCIN;NITROFURAN/PHENICOL/QUINOLONE/TETRACYCLINE;PHENICOL/QUINOLONE;TELLURIUM;AMINOGLYCOSIDE;MACROLIDE/STREPTOGRAMIN;MACROLIDE;QUINOLONE;BLEOMYCIN;SULFONAMIDE;MERCURY;TETRACYCLINE;QUATERNARY AMMONIUM;TRIMETHOPRIM;PHENICOL	AMR;VIRULENCE;STRESS	1066	99.812	177	5774242	276679	96071	69139	20	38	0.0	56.58	97.93	0.0	0.0	IMMense Loculus workflow: QUAST, MLST, 16S, CheckM, and AMRFinderPlus modules	"[{""fileId"":""FILE_00001D7"",""name"":""LOC_000008J_1.fasta"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000008J/1/released_assembly_fasta/LOC_000008J_1.fasta""}]"	"[{""fileId"":""FILE_00001E5"",""name"":""bacteria-batch-6_quality.tsv"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000008J/1/immense_quality_summary/bacteria-batch-6_quality.tsv""}]"		"[{""fileId"":""FILE_00001F3"",""name"":""LOC_000008J_1_16S_blast.tab"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000008J/1/sixteen_s_blast/LOC_000008J_1_16S_blast.tab""}]"	"[{""fileId"":""FILE_00001G1"",""name"":""LOC_000008J_1_checkm_output.tsv"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000008J/1/checkm_output/LOC_000008J_1_checkm_output.tsv""}]"	"[{""fileId"":""FILE_00001HY"",""name"":""LOC_000008J_1_amrfinderplus.tsv"",""url"":""https://api.bacteria.loculus.chaoran.name/backend/files/get/LOC_000008J/1/amrfinderplus_output/LOC_000008J_1_amrfinderplus.tsv""}]"